Publications
[* / #] indicate co-first and co-senior authorship
A full list of publications is available on Google Scholar
Selected Publications
Extracting interpretable single-cell metabolic states with graph-guided representation learning
biorxiv 2026
D. P. Lewinsohn, N. Dias, A. Chau, Y. Koike, Z. D. Smith, N. M. Ioannidis, A. Wagner
Folate deficiency disrupts key metabolic transitions within the developing neural ectoderm
biorxiv 2026
N. Dias*, D. P. Lewinsohn*, W. N. Colgan, M. Wang, Y. Kijima, J. Villagrana, T.-C. J. Hou, G. Gowri, A. Chau, T. Aktaş, K. Sumigray, J. S. Weissman, L. W. Koblan#, A. Wagner#, Z. D. Smith#
Metabolic zonation and characterization of tissue slices with spatial transcriptomics
biorxiv 2025
O. Etxezarreta Arrastoa, A.-C. Pirona, A. Wagner*, N Yosef.*.
The coming era of nudge drugs for cancer
Cancer Cell 2025
T. Courau, A. Desai, A. Wagner*, A. J. Combes*, M. F. Krummel*.
The glycolytic reaction PGAM unexpectedly restrains Th17 pathogenicity and Th17-dependent autoimmunity
Cell Reports 2025
C. Wang*, A. Wagner*, J. Fessler*, D. DeTomaso, S. Zaghouani, Y. Zhou, K. Pierce, R.A. Sobel, C. Clish, N. Yosef, V.K. Kuchroo.
Metabolic modeling of single Th17 cells reveals regulators of autoimmunity
Cell 2021
A. Wagner*, C. Wang*, J. Fessler, D. DeTomaso, J. Avila-Pacheco, J. Kaminski, S. Zaghouani, E. Christian, P. Thakore, B. Schellhaass, E. Akama-Garren, K. Pierce, V. Singh, N. Ron-Harel, V.P. Douglas, L. Bod, A. Schnell, D. Puleston, R.A. Sobel, M. Haigis, E.L. Pearce, M. Soleimani, C. Clish, A. Regev, V.K. Kuchroo, N. Yosef.
DOI: https://doi.org/10.1016/j.cell.2021.05.045
Perspective in Cell (link)
Perspective in Immunometabolism (link)
Oleic acid restores suppressive defects in tissue-resident FOXP3 Tregs from patients with multiple sclerosis
The Journal of Clinical Investigation (JCI) 2021
S.L. Pompura*, A. Wagner*, A. Kitz, J. LaPerche, N. Yosef, M. Dominguez-Villar, D.A. Hafler.
DOI: https://doi.org/10.1172/jci138519
Perspective in The New England Journal of Medicine (link)
Revealing the vectors of cellular identity with single-cell genomics
Nature Biotechnology 2016
A. Wagner, A. Regev, N. Yosef.